If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' 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'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 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'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 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'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' 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'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 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'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 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'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 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'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 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'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 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'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 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'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 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'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 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'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 'HanXRQChr00c0314g0573491' => 'han', 'HanXRQChr00c0314g0573511' => 'han', 'HanXRQChr00c0392g0574501' => 'han', 'HanXRQChr00c0394g0574571' => 'han', 'HanXRQChr00c0394g0574581' => 'han', 'HanXRQChr00c0557g0575751' => 'han', 'HanXRQChr00c0557g0575761' => 'han', 'HanXRQChr00c0557g0575771' => 'han', 'HanXRQChr00c0593g0576331' => 'han', 'HanXRQChr01g0020251' => 'han', 'HanXRQChr01g0020261' => 'han', 'HanXRQChr01g0020271' => 'han', 'HanXRQChr02g0032961' => 'han', 'HanXRQChr02g0038651' => 'han', 'HanXRQChr02g0052531' => 'han', 'HanXRQChr02g0052541' => 'han', 'HanXRQChr02g0052551' => 'han', 'HanXRQChr02g0052671' => 'han', 'HanXRQChr02g0052681' => 'han', 'HanXRQChr02g0052691' => 'han', 'HanXRQChr02g0053221' => 'han', 'HanXRQChr03g0073061' => 'han', 'HanXRQChr04g0094311' => 'han', 'HanXRQChr04g0094321' => 'han', 'HanXRQChr04g0094331' => 'han', 'HanXRQChr04g0127521' => 'han', 'HanXRQChr04g0127531' => 'han', 'HanXRQChr05g0139711' => 'han', 'HanXRQChr05g0148481' => 'han', 'HanXRQChr05g0152591' => 'han', 'HanXRQChr05g0152601' => 'han', 'HanXRQChr05g0152611' => 'han', 'HanXRQChr07g0193501' => 'han', 'HanXRQChr07g0197341' => 'han', 'HanXRQChr08g0223961' => 'han', 'HanXRQChr08g0230251' => 'han', 'HanXRQChr09g0242581' => 'han', 'HanXRQChr10g0278931' => 'han', 'HanXRQChr10g0283631' => 'han', 'HanXRQChr10g0283641' => 'han', 'HanXRQChr10g0283651' => 'han', 'HanXRQChr10g0283661' => 'han', 'HanXRQChr10g0284321' => 'han', 'HanXRQChr10g0284331' => 'han', 'HanXRQChr10g0284341' => 'han', 'HanXRQChr10g0284351' => 'han', 'HanXRQChr10g0289331' => 'han', 'HanXRQChr10g0299311' => 'han', 'HanXRQChr10g0299321' => 'han', 'HanXRQChr10g0303871' => 'han', 'HanXRQChr10g0318091' => 'han', 'HanXRQChr10g0318101' => 'han', 'HanXRQChr10g0318111' => 'han', 'HanXRQChr10g0318121' => 'han', 'HanXRQChr11g0321051' => 'han', 'HanXRQChr11g0321061' => 'han', 'HanXRQChr11g0326911' => 'han', 'HanXRQChr11g0326921' => 'han', 'HanXRQChr11g0326931' => 'han', 'HanXRQChr11g0341921' => 'han', 'HanXRQChr11g0345221' => 'han', 'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ), 'gf_id' => 'HOM05D000580', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000580' ), 'data_identifier' => 'HOM05D000580', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000580', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '959', 'num_species' => '83' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A08p09850' => 'bna', 'Ah.10g027180' => 'amhyb', 'Ah.10g027190' => 'amhyb', 'Ah.10g027360' => 'amhyb', 'Ah.10g027370' => 'amhyb', 'Ah.10g027480' => 'amhyb', 'Ah.10g027490' => 'amhyb', 'Ah.10g028950' => 'amhyb', 'Ah.10g028960' => 'amhyb', 'AL2G20590' => 'aly', 'AL2G20600' => 'aly', 'AL2G20610' => 'aly', 'AL2G20620' => 'aly', 'AL2G21650' => 'aly', 'AL2G21660' => 'aly', 'AL2G21670' => 'aly', 'AL2G21690' => 'aly', 'AL3G43780' => 'aly', 'Aqoxy12s028' => 'aox', 'Aqoxy23s001' => 'aox', 'Aqoxy7G02251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0W708Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18X8Z9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KV113' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55BQ3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5LT2YD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X81Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5AM0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA7A2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIB34T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT2N09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL8TWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZ00NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I9279U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.II40LE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZN0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8VLEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JG4FEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT01TE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR0RIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P04IPH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFFG2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TN657V' => 'arhy', 'ATCG00680' => 'ath', 'ATCG00690' => 'ath', 'ATCG00710' => 'ath', 'ATCG00720' => 'ath', 'ATCG00730' => 'ath', 'ATR0306G004' => 'atr', 'Atru.chr10.2092' => 'acertr', 'Atru.chr11.2453' => 'acertr', 'AUR62002775' => 'cqu', 'AUR62006475' => 'cqu', 'AUR62033613' => 'cqu', 'BcaB03g16405' => 'bca', 'BcaC02g09455' => 'bca', 'BcaC03g15272' => 'bca', 'BcaC03g16544' => 'bca', 'BcaC07g42434' => 'bca', 'BcaC08g44749' => 'bca', 'BcaC08g44750' => 'bca', 'BcaNung05009' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00270' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00300' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00310' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00320' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00240' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00250' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00010' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_57p00050' => 'bna', 'BolC2t08915H' => 'bol', 'BolC2t08916H' => 'bol', 'BolC2t08918H' => 'bol', 'BolC4t25864H' => 'bol', 'BolC6t36202H' => 'bol', 'BolC7t41192H' => 'bol', 'BolC7t41712H' => 'bol', 'BolC7t41713H' => 'bol', 'BolC7t41716H' => 'bol', 'BolC7t41717H' => 'bol', 'BolSC29t60481H' => 'bol', 'BolSC29t60482H' => 'bol', 'BolSC29t60484H' => 'bol', 'BolSC29t60602H' => 'bol', 'BolSC29t60604H' => 'bol', 'BolSC29t60605H' => 'bol', 'BolSC29t60606H' => 'bol', 'BolSC29t60630H' => 'bol', 'BolSC29t60631H' => 'bol', 'BolSC35t60661H' => 'bol', 'BolSC35t60662H' => 'bol', 'BolSC35t60664H' => 'bol', 'BolSC35t60665H' => 'bol', 'BolSC35t60666H' => 'bol', 'BolSC35t60733H' => 'bol', 'BolSC35t60734H' => 'bol', 'BolSC35t60735H' => 'bol', 'BolSC35t60737H' => 'bol', 'BolSC35t60738H' => 'bol', 'BolSC46t61012H' => 'bol', 'BolSC46t61013H' => 'bol', 'BolSC46t61015H' => 'bol', 'BolSC46t61016H' => 'bol', 'BolSC46t61017H' => 'bol', 'BolSC46t61021H' => 'bol', 'BolSC46t61022H' => 'bol', 'BolSC46t61024H' => 'bol', 'BolSC46t61025H' => 'bol', 'BolSC47t61078H' => 'bol', 'BolSC47t61079H' => 'bol', 'BolSC47t61080H' => 'bol', 'BolSC47t61083H' => 'bol', 'BolSC49t61166H' => 'bol', 'BolSC49t61167H' => 'bol', 'BolSC49t61168H' => 'bol', 'BolSC49t61170H' => 'bol', 'BolSC56t61249H' => 'bol', 'BraA06t25376Z' => 'bra', 'BraA06t25377Z' => 'bra', 'BraA06t25378Z' => 'bra', 'BraA06t25380Z' => 'bra', 'BraA06t25381Z' => 'bra', 'BraA08t32979Z' => 'bra', 'BraA09t39430Z' => 'bra', 'BraA09t39431Z' => 'bra', 'BraSC103t45448Z' => 'bra', 'BraSC103t45449Z' => 'bra', 'BraSC103t45451Z' => 'bra', 'BraSC103t45478Z' => 'bra', 'BraSC103t45479Z' => 'bra', 'BraSC103t45480Z' => 'bra', 'BraSC103t45481Z' => 'bra', 'BraSC138t45556Z' => 'bra', 'BraSC138t45557Z' => 'bra', 'BraSC138t45558Z' => 'bra', 'BraSC138t45560Z' => 'bra', 'BraSC138t45561Z' => 'bra', 'BraSC143t45634Z' => 'bra', 'BraSC58t46435Z' => 'bra', 'BraSC58t46437Z' => 'bra', 'BraSC58t46497Z' => 'bra', 'BraSC58t46498Z' => 'bra', 'BraSC58t46499Z' => 'bra', 'BraSC59t46574Z' => 'bra', 'BraSC59t46575Z' => 'bra', 'BraSC59t46576Z' => 'bra', 'BraSC59t46578Z' => 'bra', 'BraSC59t46579Z' => 'bra', 'C02p28670' => 'bna', 'C02p28680' => 'bna', 'C02p43620' => 'bna', 'C04p42930' => 'bna', 'C04p42940' => 'bna', 'C05p18880' => 'bna', 'C06p22880' => 'bna', 'C06p22890' => 'bna', 'C06p22910' => 'bna', 'C06p22920' => 'bna', 'C06p23080' => 'bna', 'C06p23100' => 'bna', 'C07p07710' => 'bna', 'C07p15330' => 'bna', 'CAN.G1185.2' => 'can', 'CAN.G1185.3' => 'can', 'CAN.G127.15' => 'can', 'CAN.G129.13' => 'can', 'CAN.G129.14' => 'can', 'CAN.G129.15' => 'can', 'CAN.G131.5' => 'can', 'CAN.G134.1' => 'can', 'CAN.G1367.7' => 'can', 'CAN.G1478.4' => 'can', 'CAN.G1478.5' => 'can', 'CAN.G1478.6' => 'can', 'CAN.G1478.8' => 'can', 'CAN.G150.10' => 'can', 'CAN.G1513.10' => 'can', 'CAN.G1513.8' => 'can', 'CAN.G1595.5' => 'can', 'CAN.G1595.6' => 'can', 'CAN.G1595.7' => 'can', 'CAN.G1739.6' => 'can', 'CAN.G2018.11' => 'can', 'CAN.G2018.9' => 'can', 'CAN.G204.3' => 'can', 'CAN.G219.31' => 'can', 'CAN.G219.32' => 'can', 'CAN.G219.33' => 'can', 'CAN.G233.9' => 'can', 'CAN.G259.3' => 'can', 'CAN.G29.17' => 'can', 'CAN.G307.12' => 'can', 'CAN.G327.17' => 'can', 'CAN.G34.6' => 'can', 'CAN.G648.1' => 'can', 'CAN.G648.3' => 'can', 'CAN.G77.5' => 'can', 'CAN.G8.21' => 'can', 'CAN.G8853.1' => 'can', 'CAN.G904.4' => 'can', 'CARHR194070' => 'chi', 'CARHR282190' => 'chi', 'CARHR282200' => 'chi', 'CARHR282220' => 'chi', 'CARHR292710' => 'chi', 'Carub.0001s3366' => 'cru', 'Carub.0001s3367' => 'cru', 'Carub.0006s2561' => 'cru', 'Carub.0006s2562' => 'cru', 'Carub.0006s2563' => 'cru', 'Ca_27401_v3' => 'car', 'Ca_27402_v3' => 'car', 'CBR_g74630' => 'cbr', 'CDE02G3652' => 'cde', 'Cfa021573' => 'cfa', 'Ciclev10003146m.g' => 'ccl', 'Ciclev10003393m.g' => 'ccl', 'Ciclev10003610m.g' => 'ccl', 'CiPaw.10G124800' => 'cil', 'ClCG00G002100' => 'cla', 'ClCG02G007580' => 'cla', 'ClCG08G011470' => 'cla', 'COL.COLO4_00402' => 'col', 'COL.COLO4_00598' => 'col', 'COL.COLO4_00602' => 'col', 'COL.COLO4_01313' => 'col', 'COL.COLO4_01862' => 'col', 'COL.COLO4_03062' => 'col', 'COL.COLO4_03161' => 'col', 'COL.COLO4_03185' => 'col', 'COL.COLO4_04469' => 'col', 'COL.COLO4_31381' => 'col', 'COL.COLO4_37397' => 'col', 'Cpa.g.c31780' => 'cpa', 'Cpa.g.sc185.13' => 'cpa', 'Cpa.g.sc66.109' => 'cpa', 'CsaV3_4G007360' => 'csa', 'CsaV3_5G013200' => 'csa', 'CsaV3_UNG207970' => 'csa', 'CSS0026029' => 'camsi', 'DCAR_001737' => 'dca', 'DCAR_023434' => 'dca', 'DCAR_032511' => 'dca', 'DCAR_032512' => 'dca', 'DCAR_032514' => 'dca', 'DCAR_032515' => 'dca', 'DCAR_032516' => 'dca', 'Dinv01983' => 'din', 'Dinv23964' => 'din', 'Dinv33425' => 'din', 'Duzib026G0003' => 'dzi', 'Duzib124G0006' => 'dzi', 'Duzib237G0002' => 'dzi', 'Duzib252G0006' => 'dzi', 'Duzib256G0004' => 'dzi', 'ECA074G0003' => 'eca', 'EL10Ac1g00387' => 'bvu', 'EL10Ac1g01194' => 'bvu', 'EL10Ac1g01195' => 'bvu', 'EL10Ac2g03320' => 'bvu', 'EL10Ac3g06010' => 'bvu', 'EL10Ac4g07917' => 'bvu', 'EL10Ac5g11666' => 'bvu', 'EL10Ac5g13041' => 'bvu', 'EL10Ac7g17235' => 'bvu', 'EL10Ac9g20700' => 'bvu', 'EL10Ac9g21114' => 'bvu', 'EL10Ac9g21118' => 'bvu', 'EL10Ac9g21119' => 'bvu', 'EL10Ac9g22458' => 'bvu', 'EL10As12g24031' => 'bvu', 'EL10As12g24032' => 'bvu', 'EL10As12g24033' => 'bvu', 'EL10As15g24123' => 'bvu', 'EL10As15g24125' => 'bvu', 'EL10As15g24126' => 'bvu', 'EL10As4g23447' => 'bvu', 'Eucgr.A00264' => 'egr', 'Eucgr.B01572' => 'egr', 'Eucgr.D01001' => 'egr', 'Eucgr.E04205' => 'egr', 'Eucgr.F01309' => 'egr', 'Eucgr.F03245' => 'egr', 'FAN05G1420' => 'fan', 'Glyma.01G058600' => 'gma', 'Glyma.03G065000' => 'gma', 'Glyma.05G092100' => 'gma', 'Glyma.15G114600' => 'gma', 'Glyma.15G262700' => 'gma', 'Glyma.17G186400' => 'gma', 'Glyma.19G056032' => 'gma', 'Gohir.1Z049666' => 'ghi', 'Gohir.1Z049866' => 'ghi', 'Gohir.1Z078400' => 'ghi', 'Gohir.1Z078501' => 'ghi', 'Gohir.1Z078601' => 'ghi', 'Gohir.1Z078801' => 'ghi', 'Gohir.A01G104300' => 'ghi', 'Gohir.A01G128325' => 'ghi', 'Gohir.A01G137760' => 'ghi', 'Gohir.A02G022101' => 'ghi', 'Gohir.A02G100500' => 'ghi', 'Gohir.A03G093700' => 'ghi', 'Gohir.A03G137700' => 'ghi', 'Gohir.A05G142175' => 'ghi', 'Gohir.A05G286600' => 'ghi', 'Gohir.A05G301450' => 'ghi', 'Gohir.A05G326916' => 'ghi', 'Gohir.A06G115400' => 'ghi', 'Gohir.A07G130966' => 'ghi', 'Gohir.A09G004950' => 'ghi', 'Gohir.A09G043800' => 'ghi', 'Gohir.A09G044450' => 'ghi', 'Gohir.A09G083720' => 'ghi', 'Gohir.A09G103075' => 'ghi', 'Gohir.A09G103100' => 'ghi', 'Gohir.A09G103750' => 'ghi', 'Gohir.A10G070250' => 'ghi', 'Gohir.A12G124750' => 'ghi', 'Gohir.A12G178615' => 'ghi', 'Gohir.A12G178620' => 'ghi', 'Gohir.A12G178630' => 'ghi', 'Gohir.A12G178635' => 'ghi', 'Gohir.A12G178640' => 'ghi', 'Gohir.A12G178665' => 'ghi', 'Gohir.A12G178670' => 'ghi', 'Gohir.A12G178675' => 'ghi', 'Gohir.A12G228650' => 'ghi', 'Gohir.A12G228775' => 'ghi', 'Gohir.A12G228900' => 'ghi', 'Gohir.A12G229100' => 'ghi', 'Gohir.A13G110000' => 'ghi', 'Gohir.D01G102034' => 'ghi', 'Gohir.D01G102060' => 'ghi', 'Gohir.D01G102073' => 'ghi', 'Gohir.D01G102086' => 'ghi', 'Gohir.D01G209050' => 'ghi', 'Gohir.D02G096801' => 'ghi', 'Gohir.D02G096900' => 'ghi', 'Gohir.D02G116150' => 'ghi', 'Gohir.D02G147200' => 'ghi', 'Gohir.D04G149675' => 'ghi', 'Gohir.D05G244650' => 'ghi', 'Gohir.D06G113901' => 'ghi', 'Gohir.D06G145266' => 'ghi', 'Gohir.D07G122550' => 'ghi', 'Gohir.D07G170866' => 'ghi', 'Gohir.D08G029650' => 'ghi', 'Gohir.D08G100000' => 'ghi', 'Gohir.D09G012501' => 'ghi', 'Gohir.D09G103600' => 'ghi', 'Gohir.D11G238251' => 'ghi', 'Gohir.D11G263033' => 'ghi', 'Gohir.D11G298766' => 'ghi', 'Gohir.D12G088201' => 'ghi', 'Gohir.D13G099025' => 'ghi', 'Gorai.001G099800' => 'gra', 'Gorai.001G132300' => 'gra', 'Gorai.001G191300' => 'gra', 'Gorai.001G201300' => 'gra', 'Gorai.001G244900' => 'gra', 'Gorai.002G148800' => 'gra', 'Gorai.002G254300' => 'gra', 'Gorai.003G087600' => 'gra', 'Gorai.004G027100' => 'gra', 'Gorai.004G107800' => 'gra', 'Gorai.004G123400' => 'gra', 'Gorai.004G150600' => 'gra', 'Gorai.005G110300' => 'gra', 'Gorai.005G110400' => 'gra', 'Gorai.005G110500' => 'gra', 'Gorai.005G137700' => 'gra', 'Gorai.005G164900' => 'gra', 'Gorai.006G014600' => 'gra', 'Gorai.007G064400' => 'gra', 'Gorai.007G251900' => 'gra', 'Gorai.007G252100' => 'gra', 'Gorai.007G282700' => 'gra', 'Gorai.007G283100' => 'gra', 'Gorai.007G323800' => 'gra', 'Gorai.008G093900' => 'gra', 'Gorai.008G286600' => 'gra', 'Gorai.009G253800' => 'gra', 'Gorai.009G308600' => 'gra', 'Gorai.009G350200' => 'gra', 'Gorai.010G031500' => 'gra', 'Gorai.010G129900' => 'gra', 'Gorai.010G169000' => 'gra', 'Gorai.012G044000' => 'gra', 'Gorai.N012700' => 'gra', 'GSVIVG01006503001' => 'vvi', 'GSVIVG01028641001' => 'vvi', 'HanXRQChr00c0314g0573481' => 'han', 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'HanXRQChr11g0345231' => 'han', 'HanXRQChr11g0345241' => 'han', 'HanXRQChr11g0345251' => 'han', 'HanXRQChr12g0369831' => 'han', 'HanXRQChr13g0395721' => 'han', 'HanXRQChr13g0413451' => 'han', 'HanXRQChr14g0459311' => 'han', 'HanXRQChr15g0486551' => 'han', 'HanXRQChr16g0506211' => 'han', 'HanXRQChr16g0513491' => 'han', 'HanXRQChr16g0529041' => 'han', 'HanXRQChr16g0529051' => 'han', 'HanXRQChr17g0565661' => 'han', 'HanXRQChr17g0570211' => 'han', 'HanXRQCPg0580121' => 'han', 'HanXRQCPg0580131' => 'han', 'HanXRQCPg0580141' => 'han', 'HanXRQCPg0580151' => 'han', 'Hma1.2p1_0084F.1_g043800' => 'hma', 'Hma1.2p1_0149F.1_g066500' => 'hma', 'Hma1.2p1_0218F.1_g092720' => 'hma', 'Hma1.2p1_0218F.1_g092740' => 'hma', 'Hma1.2p1_0815F.1_g222690' => 'hma', 'Hma1.2p1_2223F.1_g317406' => 'hma', 'Hma1.2p1_2223F.1_g317409' => 'hma', 'HPP92_022277' => 'vpl', 'HPP92_028401' => 'vpl', 'Hund04055' => 'sun', 'Hund04056' => 'sun', 'Hund08569' => 'sun', 'Hund08570' => 'sun', 'Hund08571' => 'sun', 'Hund08804' => 'sun', 'Hund08805' => 'sun', 'Hund10594' => 'sun', 'Hund10713' => 'sun', 'Hund12525' => 'sun', 'Hund12526' => 'sun', 'Hund15206' => 'sun', 'Hund15207' => 'sun', 'Hund19318' => 'sun', 'Hund19319' => 'sun', 'Hund22693' => 'sun', 'Hund25909' => 'sun', 'Hund26843' => 'sun', 'Hund27465' => 'sun', 'Hund27466' => 'sun', 'Hund27479' => 'sun', 'Hund27480' => 'sun', 'Hund27575' => 'sun', 'Hund27576' => 'sun', 'Hund27594' => 'sun', 'Hund27595' => 'sun', 'Hund27893' => 'sun', 'Hund27894' => 'sun', 'Hund27959' => 'sun', 'Hund27960' => 'sun', 'Hund27982' => 'sun', 'Hund27983' => 'sun', 'Hund28047' => 'sun', 'Hund28048' => 'sun', 'Hund28106' => 'sun', 'Hund28107' => 'sun', 'Hund28265' => 'sun', 'Hund28266' => 'sun', 'Hund28324' => 'sun', 'Hund28325' => 'sun', 'Hund28456' => 'sun', 'Hund28457' => 'sun', 'Hund28467' => 'sun', 'Hund28468' => 'sun', 'Hund28486' => 'sun', 'Hund28487' => 'sun', 'Hund28516' => 'sun', 'Hund28517' => 'sun', 'Hund28526' => 'sun', 'Hund28527' => 'sun', 'Hund28629' => 'sun', 'Hund28630' => 'sun', 'Hund28675' => 'sun', 'Hund28676' => 'sun', 'Hund28743' => 'sun', 'Hund28744' => 'sun', 'Hund28755' => 'sun', 'Hund28756' => 'sun', 'Hund28757' => 'sun', 'Hund28843' => 'sun', 'Hund28844' => 'sun', 'Hund28888' => 'sun', 'Hund28889' => 'sun', 'Hund29019' => 'sun', 'Hund29020' => 'sun', 'Hund29033' => 'sun', 'Hund29034' => 'sun', 'Hund29160' => 'sun', 'Hund29161' => 'sun', 'Hund29162' => 'sun', 'Hund29214' => 'sun', 'Hund29215' => 'sun', 'Hund29226' => 'sun', 'Hund29227' => 'sun', 'Hund29232' => 'sun', 'Hund29233' => 'sun', 'Hund29507' => 'sun', 'Hund29508' => 'sun', 'Hund29509' => 'sun', 'Hund29522' => 'sun', 'Hund29523' => 'sun', 'Hund29532' => 'sun', 'Hund29533' => 'sun', 'Hund29534' => 'sun', 'Hund29535' => 'sun', 'Hund29543' => 'sun', 'Hund29544' => 'sun', 'Hund29548' => 'sun', 'Hund29549' => 'sun', 'Hund29552' => 'sun', 'Hund29561' => 'sun', 'Hund29562' => 'sun', 'Hund29565' => 'sun', 'Hund29566' => 'sun', 'Hund29572' => 'sun', 'Hund29573' => 'sun', 'Hund29583' => 'sun', 'Hund29584' => 'sun', 'Hund29590' => 'sun', 'Hund29591' => 'sun', 'Hund29600' => 'sun', 'Hund29601' => 'sun', 'Hund29602' => 'sun', 'Hund29603' => 'sun', 'Hund29609' => 'sun', 'Hund29610' => 'sun', 'Hund29665' => 'sun', 'Hund29666' => 'sun', 'Hund29678' => 'sun', 'Hund29679' => 'sun', 'Hund29680' => 'sun', 'Hund29716' => 'sun', 'Hund29717' => 'sun', 'Hund29876' => 'sun', 'Hund29955' => 'sun', 'Hund30033' => 'sun', 'Hund30034' => 'sun', 'Hund30066' => 'sun', 'Hund30067' => 'sun', 'Hund30082' => 'sun', 'Hund30083' => 'sun', 'Hund30095' => 'sun', 'Hund30302' => 'sun', 'Hund30303' => 'sun', 'Hund30444' => 'sun', 'Hund30445' => 'sun', 'Hund30484' => 'sun', 'Hund30485' => 'sun', 'Hund30586' => 'sun', 'Hund30619' => 'sun', 'Hund30701' => 'sun', 'Hund30740' => 'sun', 'Hund30755' => 'sun', 'Hund30756' => 'sun', 'Hund30800' => 'sun', 'Hund30997' => 'sun', 'Hund31073' => 'sun', 'Lalb_Chr01g0009811' => 'lal', 'Lalb_Chr03g0039291' => 'lal', 'Lalb_Chr03g0039301' => 'lal', 'Lalb_Chr07g0192021' => 'lal', 'Lalb_Chr07g0192031' => 'lal', 'Lalb_Chr08g0236171' => 'lal', 'Lalb_Chr10g0093221' => 'lal', 'Lalb_Chr15g0080801' => 'lal', 'Lalb_Chr18g0049331' => 'lal', 'Lalb_Chr18g0049341' => 'lal', 'Lalb_Chr18g0049351' => 'lal', 'Lalb_Chr18g0049361' => 'lal', 'Lalb_Chr18g0049371' => 'lal', 'Lalb_Chr18g0049681' => 'lal', 'Lalb_Chr18g0049691' => 'lal', 'Lalb_Chr18g0049701' => 'lal', 'Lalb_Chr18g0049711' => 'lal', 'Lalb_Chr20g0115431' => 'lal', 'Lalb_Chr23g0274181' => 'lal', 'Lalb_Chr23g0274191' => 'lal', 'Lalb_Chr23g0274211' => 'lal', 'Lalb_Chr23g0274221' => 'lal', 'Lalb_Chr23g0274371' => 'lal', 'Lalb_Chr23g0274381' => 'lal', 'Lalb_Chr24g0401241' => 'lal', 'Lalb_Chr25g0280661' => 'lal', 'Lalb_Chr25g0283331' => 'lal', 'Lalb_Chr25g0283341' => 'lal', 'Lj1P929T39' => 'lonja', 'Lj2A1237G133' => 'lonja', 'Lj2P1234T92' => 'lonja', 'Lj2P1234T99' => 'lonja', 'Lj2P1235T101' => 'lonja', 'Lj2P1237T69' => 'lonja', 'Lj2P1239T124' => 'lonja', 'Lj2P1239T125' => 'lonja', 'Lj2P1239T127' => 'lonja', 'Lj6P382T15' => 'lonja', 'LjContig00318g0016009' => 'lja', 'LjContig00318g0018353' => 'lja', 'LjContig00319g0006223' => 'lja', 'LjContig00319g0009538' => 'lja', 'LjContig00319g0017313' => 'lja', 'LjContig00319g0022083' => 'lja', 'LjContig00319g0023151' => 'lja', 'LjContig00319g0024255' => 'lja', 'LjContig00319g0027618' => 'lja', 'Lju5009A0G59' => 'lonja', 'Lju50C25G5' => 'lonja', 'Lju50C25G6' => 'lonja', 'Lsat_1_v5_gn_1_75781' => 'lsa', 'Lsat_1_v5_gn_2_129581' => 'lsa', 'Lsat_1_v5_gn_2_51020' => 'lsa', 'Lsat_1_v5_gn_3_45960' => 'lsa', 'Lsat_1_v5_gn_3_85721' => 'lsa', 'Lsat_1_v5_gn_5_170261' => 'lsa', 'Lsat_1_v5_gn_5_50320' => 'lsa', 'Lsat_1_v5_gn_5_50340' => 'lsa', 'Lsat_1_v5_gn_5_50360' => 'lsa', 'Lsat_1_v5_gn_5_67060' => 'lsa', 'Lsat_1_v5_gn_5_861' => 'lsa', 'Lsat_1_v5_gn_5_881' => 'lsa', 'Lsat_1_v5_gn_5_95781' => 'lsa', 'Lsat_1_v5_gn_6_19721' => 'lsa', 'Lsat_1_v5_gn_8_11001' => 'lsa', 'Lsat_1_v5_gn_8_161300' => 'lsa', 'Lsat_1_v5_gn_8_77880' => 'lsa', 'Lsat_1_v5_gn_9_51000' => 'lsa', 'Lsat_1_v5_gn_9_51020' => 'lsa', 'Mapoly1555s0001' => 'mpo', 'Mapoly4043s0001' => 'mpo', 'MBI16_g45336_MAGBIO' => 'mbi', 'MBI18_g21796_MAGBIO' => 'mbi', 'MCO11G579' => 'mco', 'MD00G1121600' => 'mdo', 'MD04G1032200' => 'mdo', 'MD11G1138700' => 'mdo', 'MD16G1017300' => 'mdo', 'Medtr0002s0740' => 'mtr', 'Medtr0002s0750' => 'mtr', 'Medtr2g021500' => 'mtr', 'Medtr2g062930' => 'mtr', 'Medtr2g103540' => 'mtr', 'Medtr4g031190' => 'mtr', 'Medtr4g034790' => 'mtr', 'Medtr4g051370' => 'mtr', 'Medtr4g051375' => 'mtr', 'Medtr4g083450' => 'mtr', 'Medtr5g041300' => 'mtr', 'Medtr5g041320' => 'mtr', 'Medtr5g092940' => 'mtr', 'Medtr7g100030' => 'mtr', 'Medtr8g039420' => 'mtr', 'MELO3C000277.2' => 'cme', 'MELO3C000399.2' => 'cme', 'MELO3C000500.2' => 'cme', 'MELO3C002898.2' => 'cme', 'MELO3C027459.2' => 'cme', 'MELO3C028688.2' => 'cme', 'MELO3C033573.2' => 'cme', 'MELO3C033895.2' => 'cme', 'MELO3C034318.2' => 'cme', 'Migut.D01364' => 'egut', 'Migut.D01365' => 'egut', 'Migut.D01366' => 'egut', 'Migut.D01367' => 'egut', 'Migut.D01432' => 'egut', 'Migut.D01433' => 'egut', 'Migut.D01947' => 'egut', 'Migut.F01506' => 'egut', 'Migut.H01967' => 'egut', 'Migut.I00427' => 'egut', 'Migut.K00751' => 'egut', 'Migut.K00929' => 'egut', 'Migut.K01174' => 'egut', 'Migut.L00683' => 'egut', 'Migut.N02087' => 'egut', 'Nitab4.5_0000033g0060' => 'nta', 'Nitab4.5_0000496g0040' => 'nta', 'Nitab4.5_0001105g0130' => 'nta', 'Nitab4.5_0001105g0140' => 'nta', 'Nitab4.5_0001660g0040' => 'nta', 'Nitab4.5_0002282g0130' => 'nta', 'Nitab4.5_0002596g0120' => 'nta', 'Nitab4.5_0002739g0090' => 'nta', 'Nitab4.5_0003957g0010' => 'nta', 'Nitab4.5_0004376g0090' => 'nta', 'Nitab4.5_0004376g0150' => 'nta', 'Nitab4.5_0008074g0020' => 'nta', 'Nitab4.5_0010531g0030' => 'nta', 'Nitab4.5_0010531g0040' => 'nta', 'Nitab4.5_0010922g0030' => 'nta', 'Nitab4.5_0018523g0020' => 'nta', 'Nn002s41357' => 'nnu', 'Nn002s41358' => 'nnu', 'Nn021s41525' => 'nnu', 'Nn021s41526' => 'nnu', 'Nn049s41914' => 'nnu', 'Nn049s41915' => 'nnu', 'Nn1g07994' => 'nnu', 'Nn1g09714' => 'nnu', 'Nn2g14821' => 'nnu', 'Nn2g15463' => 'nnu', 'Nn314s46298' => 'nnu', 'Nn314s46301' => 'nnu', 'Nn3g18041' => 'nnu', 'Nn3g20213' => 'nnu', 'Nn8g40935' => 'nnu', 'Oeu004678.1' => 'oeu', 'Oeu008581.1' => 'oeu', 'Oeu028771.1' => 'oeu', 'Oeu053042.1' => 'oeu', 'Oeu058363.1' => 'oeu', 'Oeu058364.1' => 'oeu', 'Oeu058365.1' => 'oeu', 'Peaxi162Scf00121g00178' => 'pax', 'Peaxi162Scf00299g00012' => 'pax', 'Peaxi162Scf00299g00112' => 'pax', 'Peaxi162Scf00299g10016' => 'pax', 'Peaxi162Scf00527g00036' => 'pax', 'Peaxi162Scf00527g00037' => 'pax', 'Peaxi162Scf00527g00321' => 'pax', 'Peaxi162Scf00987g00022' => 'pax', 'PGR111G0048' => 'pgr', 'PGR111G0071' => 'pgr', 'PGR111G0073' => 'pgr', 'PGR111G0121' => 'pgr', 'PGR111G0129' => 'pgr', 'PGSC0003DMG400004326' => 'stu', 'PGSC0003DMG400006472' => 'stu', 'PGSC0003DMG400019419' => 'stu', 'PGSC0003DMG400046303' => 'stu', 'Phvul.001G066100' => 'pvu', 'Phvul.004G081500' => 'pvu', 'Phvul.008G162200' => 'pvu', 'Phvul.008G292600' => 'pvu', 'Potri.002G174001' => 'ptr', 'Potri.007G062202' => 'ptr', 'Potri.011G074600' => 'ptr', 'Potri.011G074700' => 'ptr', 'Potri.011G074742' => 'ptr', 'Potri.011G074750' => 'ptr', 'Potri.011G074826' => 'ptr', 'Potri.011G074868' => 'ptr', 'Potri.011G074901' => 'ptr', 'Potri.011G113575' => 'ptr', 'Potri.011G113742' => 'ptr', 'Potri.011G113784' => 'ptr', 'Potri.011G113800' => 'ptr', 'Potri.013G088900' => 'ptr', 'Potri.017G140700' => 'ptr', 'Potri.019G028200' => 'ptr', 'Potri.019G028351' => 'ptr', 'Pp3c1_3600' => 'ppa', 'Pp3c21_5650' => 'ppa', 'Pp3c21_5670' => 'ppa', 'Prupe.1G203800' => 'ppe', 'Prupe.7G021700' => 'ppe', 'Prupe.7G029800' => 'ppe', 'Psat0s1446g0280' => 'psa', 'Psat0s7142g0160' => 'psa', 'Psat5g206560' => 'psa', 'Psat6g110880' => 'psa', 'Psat6g181560' => 'psa', 'Psat6g181600' => 'psa', 'Psat7g045200' => 'psa', 'PSO548G0006' => 'pso', 'PSO548G0043' => 'pso', 'PSO548G0057' => 'pso', 'PSO548G0060' => 'pso', 'PSO548G0100' => 'pso', 'QL93p0311_0003' => 'qlo', 'QL93p1043_0014' => 'qlo', 'QL93p1043_0018' => 'qlo', 'RcHm_v2.0_Chr2g0140191' => 'rch', 'RcHm_v2.0_Chr3g0476911' => 'rch', 'RcHm_v2.0_Chr4g0390611' => 'rch', 'RcHm_v2.0_Chr6g0260461' => 'rch', 'RcHm_v2.0_Chr6g0260471' => 'rch', 'RcHm_v2.0_Chr6g0260481' => 'rch', 'RcHm_v2.0_CPg0501911' => 'rch', 'RcHm_v2.0_CPg0501931' => 'rch', 'RcHm_v2.0_CPg0501961' => 'rch', 'RcHm_v2.0_CPg0501971' => 'rch', 'RhsimPtG0002000' => 'rsi', 'SabraMtG0010300' => 'sbr', 'SabraPtG0004000' => 'sbr', 'SabraPtG0004100' => 'sbr', 'SalBow1G0046' => 'sbo', 'SalBow1G5124' => 'sbo', 'SalBow1G7132' => 'sbo', 'Sc03g0005680' => 'sci', 'Sc07g0006580' => 'sci', 'Sc15g0001500' => 'sci', 'Sc19g0007130' => 'sci', 'Sc24g0000860' => 'sci', 'Sc24g0000870' => 'sci', 'Sed0004233' => 'sed', 'Sed0006310' => 'sed', 'Sed0007408' => 'sed', 'Sed0008111' => 'sed', 'Sed0008946' => 'sed', 'Sed0011733' => 'sed', 'Sed0012510' => 'sed', 'Sed0015899' => 'sed', 'Sed0016821' => 'sed', 'Sed0019665' => 'sed', 'Sed0021642' => 'sed', 'Sed0028104' => 'sed', 'SEGI_00107' => 'sgi', 'SEGI_01832' => 'sgi', 'SEGI_05365' => 'sgi', 'SEGI_05523' => 'sgi', 'SEGI_07086' => 'sgi', 'SEGI_07565' => 'sgi', 'SEGI_08508' => 'sgi', 'SEGI_09858' => 'sgi', 'SEGI_10357' => 'sgi', 'SEGI_10521' => 'sgi', 'SEGI_10580' => 'sgi', 'SEGI_11526' => 'sgi', 'SEGI_12077' => 'sgi', 'SEGI_12115' => 'sgi', 'SEGI_12382' => 'sgi', 'SEGI_13281' => 'sgi', 'SEGI_14518' => 'sgi', 'SEGI_14555' => 'sgi', 'SEGI_16433' => 'sgi', 'SEGI_16649' => 'sgi', 'SEGI_16997' => 'sgi', 'SEGI_17520' => 'sgi', 'SEGI_18833' => 'sgi', 'SEGI_19633' => 'sgi', 'SEGI_20476' => 'sgi', 'SEGI_21706' => 'sgi', 'SEGI_22708' => 'sgi', 'SEGI_22946' => 'sgi', 'SEGI_23649' => 'sgi', 'SEGI_23726' => 'sgi', 'SEGI_25005' => 'sgi', 'SEGI_25414' => 'sgi', 'SEGI_26965' => 'sgi', 'SEGI_27179' => 'sgi', 'SEGI_27622' => 'sgi', 'SEGI_28389' => 'sgi', 'SEGI_28704' => 'sgi', 'SEGI_29085' => 'sgi', 'SEGI_30129' => 'sgi', 'SEGI_31552' => 'sgi', 'SEGI_39675' => 'sgi', 'SEGI_40065' => 'sgi', 'SEGI_40987' => 'sgi', 'SEGI_41253' => 'sgi', 'SGA_v2.0_scaffold13G06598' => 'sas', 'SGA_v2.0_scaffold255G45346' => 'sas', 'SGA_v2.0_scaffold334G49035' => 'sas', 'SGA_v2.0_scaffold479G52253' => 'sas', 'SGA_v2.0_scaffold479G52254' => 'sas', 'SGA_v2.0_scaffold58G20386' => 'sas', 'SMO086G0001' => 'smo', 'SMO086G0029' => 'smo', 'SMO086G0045' => 'smo', 'SMO086G0064' => 'smo', 'Solyc00g118680.2' => 'sly', 'Solyc00g500024.1' => 'sly', 'Solyc00g500026.1' => 'sly', 'Solyc00g500027.1' => 'sly', 'Solyc00g500028.1' => 'sly', 'Solyc00g500071.1' => 'sly', 'Solyc00g500072.1' => 'sly', 'Solyc00g500073.1' => 'sly', 'Solyc00g500158.1' => 'sly', 'Solyc01g011417.1' => 'sly', 'Solyc01g017430.1' => 'sly', 'Solyc01g017740.2' => 'sly', 'Solyc03g122000.4' => 'sly', 'Solyc07g032450.1' => 'sly', 'Solyc11g006675.1' => 'sly', 'Solyc12g035280.1' => 'sly', 'Sopen01g008000' => 'spe', 'Sopen01g027130' => 'spe', 'Sopen01g027200' => 'spe', 'Sopen02g004650' => 'spe', 'Sopen05g009050' => 'spe', 'Sopen05g017070' => 'spe', 'Sopen07g005320' => 'spe', 'Sopen08g010240' => 'spe', 'Sopen10g010300' => 'spe', 'Sp5g12490' => 'spa', 'TAR369G1069' => 'tar', 'TAR381G0241' => 'tar', 'TPR.G22043' => 'tpr', 'TWI09G1156' => 'twi', 'TWI59G1260' => 'twi', 'unitig_91.g26510' => 'ugi', 'vmacro11633' => 'vma', 'vmacro22410' => 'vma', 'VMungo0354G0003' => 'vmu', 'VMungo1383G0604' => 'vmu' ) $gf_id = 'HOM05D000580' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000580' ) $data_identifier = 'HOM05D000580' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 8, 'bol' => (int) 47, 'bra' => (int) 31, 'can' => (int) 38, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 2, 'cbr' => (int) 1, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 1, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 1, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 1, 'bvu' => (int) 21, 'egr' => (int) 6, 'fan' => (int) 1, 'gma' => (int) 7, 'ghi' => (int) 65, 'gra' => (int) 34, 'vvi' => (int) 2, 'han' => (int) 80, 'hma' => (int) 7, 'vpl' => (int) 2, 'sun' => (int) 137, 'lal' => (int) 28, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 19, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 15, 'cme' => (int) 9, 'egut' => (int) 15, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 4, 'ptr' => (int) 17, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 10, 'rsi' => (int) 1, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 44, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 16, 'spe' => (int) 9, 'spa' => (int) 1, 'tar' => (int) 2, 'tpr' => (int) 1, 'twi' => (int) 2, 'ugi' => (int) 1, 'vma' => (int) 2, 'vmu' => (int) 2 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G0604' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1